Mercurial > repos > iuc > package_openbabel_2_3
comparison tool_dependencies.xml @ 5:22492d97b604 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 2e18fe350712147421228210013814bc0aeec120
| author | iuc |
|---|---|
| date | Tue, 01 Mar 2016 10:42:59 -0500 |
| parents | 4ec0d9c57ddd |
| children |
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| 4:4ec0d9c57ddd | 5:22492d97b604 |
|---|---|
| 4 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="openbabel" version="2.3.2"> | 6 <package name="openbabel" version="2.3.2"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action> | 9 <action sha256sum="4eaca26679aa6cc85ebf96af19191472ac63ca442c36b0427b369c3a25705188" type="download_by_url">https://depot.galaxyproject.org/software/openbabel/openbabel_2.3.2_src_all.tar.gz</action> |
| 10 | |
| 11 <!-- populate the environment variables from the dependend repos --> | |
| 12 <action type="set_environment_for_install"> | 10 <action type="set_environment_for_install"> |
| 13 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | 11 <repository changeset_revision="de8798991a6a" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 14 <package name="eigen3" version="3.1.3" /> | 12 <package name="eigen3" version="3.1.3" /> |
| 15 </repository> | 13 </repository> |
| 16 </action> | 14 </action> |
| 17 | 15 |
| 18 <!-- | 16 <!-- Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. --> |
| 19 Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. | |
| 20 --> | |
| 21 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action> | 17 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action> |
| 22 <action type="make_install" /> | 18 <action type="make_install" /> |
| 23 <action type="set_environment"> | 19 <action type="set_environment"> |
| 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> | 21 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> |