Mercurial > repos > iuc > package_openbabel_2_3

changeset 3:02102db6f1b9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 13:48:46 -0500
parents ac9bf7ac1281
children 4ec0d9c57ddd
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Feb 18 11:35:57 2015 -0500
+++ b/tool_dependencies.xml	Thu Nov 19 13:48:46 2015 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="eigen3" version="3.1.3">
-        <repository changeset_revision="c691cdd90be4" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="43f1ac6314d1" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="openbabel" version="2.3.2">
         <install version="1.0">
@@ -10,7 +10,7 @@
 
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="c691cdd90be4" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="43f1ac6314d1" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="eigen3" version="3.1.3" />
                     </repository>
                 </action>
@@ -19,8 +19,7 @@
                     Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
                 -->
                 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action>
-                <action type="shell_command">make</action>
-                <action type="shell_command">make install</action>
+                <action type="make_install" />
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>