Mercurial > repos > gga > chado_organism_delete_organisms

annotate organism_delete_organism.xml @ 10:c0e87b20fe72 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:19:27 -0400
parents e689a359238b
children f60ab76373da
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1 <?xml version="1.0"?>
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2 <tool id="organism_delete_organisms" name="Chado organism delete" version="@WRAPPER_VERSION@.0">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @START_PSQL@ &&
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12 chakin organism delete_organisms
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14 --organism_id $organism
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16 > '$results'
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18 && @ZIP_PSQL@
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19 ]]></command>
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20 <inputs>
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21 <expand macro="psql_target"/>
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22 <!-- arguments -->
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24 <!-- options -->
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25 <param argument="--organism"
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26 type="select"
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27 dynamic_options="list_organisms()"
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28 label="Organism" />
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30 </inputs>
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31 <outputs>
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32 <data format="txt" name="results"/>
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33 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
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34 <filter>psql_target['method'] == "pgtools"</filter>
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35 </data>
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36 </outputs>
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37 <help>
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38 Delete all organisms
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40 @HELP@
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41 </help>
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42 </tool>