Mercurial > repos > gga > chado_organism_delete_organisms
comparison organism_delete_organism.xml @ 10:c0e87b20fe72 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author | gga |
---|---|
date | Mon, 08 Jul 2019 05:19:27 -0400 |
parents | e689a359238b |
children | f60ab76373da |
comparison
equal
deleted
inserted
replaced
9:e689a359238b | 10:c0e87b20fe72 |
---|---|
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <code file="chado.py"/> | 8 <code file="chado.py"/> |
9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
10 @AUTH@ | 10 @START_PSQL@ && |
11 | 11 |
12 chakin organism delete_organisms | 12 chakin organism delete_organisms |
13 | 13 |
14 --organism_id $organism | 14 --organism_id $organism |
15 | 15 |
16 > '$results' | 16 > '$results' |
17 | |
18 && @ZIP_PSQL@ | |
17 ]]></command> | 19 ]]></command> |
18 <inputs> | 20 <inputs> |
21 <expand macro="psql_target"/> | |
19 <!-- arguments --> | 22 <!-- arguments --> |
20 | 23 |
21 <!-- options --> | 24 <!-- options --> |
22 <param argument="--organism" | 25 <param argument="--organism" |
23 type="select" | 26 type="select" |
25 label="Organism" /> | 28 label="Organism" /> |
26 | 29 |
27 </inputs> | 30 </inputs> |
28 <outputs> | 31 <outputs> |
29 <data format="txt" name="results"/> | 32 <data format="txt" name="results"/> |
33 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> | |
34 <filter>psql_target['method'] == "pgtools"</filter> | |
35 </data> | |
30 </outputs> | 36 </outputs> |
31 <help> | 37 <help> |
32 Delete all organisms | 38 Delete all organisms |
33 | 39 |
34 @HELP@ | 40 @HELP@ |