view organism_delete_organism.xml @ 10:c0e87b20fe72 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea

<?xml version="1.0"?>
<tool id="organism_delete_organisms" name="Chado organism delete" version="@WRAPPER_VERSION@.0">
    <description></description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
    <code file="chado.py"/>
	<command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin organism delete_organisms

--organism_id $organism

 > '$results'

&& @ZIP_PSQL@
    ]]></command>
	<inputs>
    <expand macro="psql_target"/>
    <!-- arguments -->

    <!-- options -->
    <param argument="--organism"
           type="select"
           dynamic_options="list_organisms()"
           label="Organism" />

	</inputs>
	<outputs>
		<data format="txt" name="results"/>
    <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
			<filter>psql_target['method'] == "pgtools"</filter>
		</data>
	</outputs>
	<help>
Delete all organisms

@HELP@
	</help>
</tool>