Mercurial > repos > gga > chado_organism_delete_organisms

diff organism_delete_organism.xml @ 0:dcb5af1b4157 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:29:29 -0400
parents
children ebd003efb46a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/organism_delete_organism.xml	Thu Jun 21 08:29:29 2018 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool id="organism_delete_organisms" name="Chado organism delete" version="@WRAPPER_VERSION@.0">
+ <description>delete_organisms</description>
+	<macros>
+		<import>macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
+    <code file="chado.py"/>
+	<command detect_errors="aggressive"><![CDATA[
+@AUTH@
+
+chakin organism delete_organisms
+
+--organism_id $organism
+
+ > $results
+    ]]></command>
+	<inputs>
+    <!-- arguments -->
+
+    <!-- options -->
+    <param argument="--organism"
+           type="select"
+           dynamic_options="list_organisms()"
+           label="Organism" />
+
+	</inputs>
+	<outputs>
+		<data format="txt" name="results"/>
+	</outputs>
+	<help>
+Delete all organisms
+
+@HELP@
+	</help>
+</tool>