Mercurial > repos > fubar > weblogo3
changeset 12:a2eb8f3b525d draft
Uploaded
| author | fubar |
|---|---|
| date | Wed, 25 Sep 2013 23:24:24 -0400 |
| parents | 013ebb4e8794 |
| children | a4536520f4dc |
| files | rgweblogo/README~ |
| diffstat | 1 files changed, 30 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rgweblogo/README~ Wed Sep 25 23:24:24 2013 -0400 @@ -0,0 +1,30 @@ +This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool + +It generates sequence logos from fasta files such as the alignments generated by clustalw + +Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data + +**Installation** + +Make sure weblogo3 is installed in your system python and is available on the path for all your nodes + +Move the test data files to your galaxy root test-data +Move the xml file to a subdirectory of your tools folder (eg rgenetics/) and then add a line in your tool_conf.xml to point there. +Run +sh run_functional_tests.sh -id weblogo3 +to make sure the tests work + +then restart Galaxy and you should be good to go. + + +**Attribution** + +Source for the weblogo3 python executable is at http://weblogo.berkeley.edu + +Written by Ross Lazarus for the Rgenetics project + +Copyright Ross Lazarus at gmail com 2011 + +All rights reserved. + +Released under the LGPL - see http://www.gnu.org/copyleft/lesser.html