Mercurial > repos > fubar > weblogo3

This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool

It generates sequence logos from fasta files such as the alignments generated by clustalw

Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data

**Installation**

Make sure weblogo3 is installed in your system python and is available on the path for all your nodes

Move the test data files to your galaxy root test-data
Move the xml file to a subdirectory of your tools folder (eg rgenetics/) and then add a line in your tool_conf.xml to point there.
Run
sh run_functional_tests.sh -id weblogo3
to make sure the tests work

then restart Galaxy and you should be good to go.


**Attribution**

Source for the weblogo3 python executable is at http://weblogo.berkeley.edu

Written by Ross Lazarus for the Rgenetics project

Copyright Ross Lazarus at gmail com 2011

All rights reserved.

Released under the LGPL - see http://www.gnu.org/copyleft/lesser.html
author	fubar
date	Wed, 25 Sep 2013 23:24:24 -0400
parents	78fe723fde78
children