Mercurial > repos > fubar > weblogo3
changeset 11:013ebb4e8794 draft
Deleted selected files
| author | fubar |
|---|---|
| date | Wed, 25 Sep 2013 23:23:42 -0400 |
| parents | 3d15ab2e0edc |
| children | a2eb8f3b525d |
| files | rgweblogo/README~ |
| diffstat | 1 files changed, 0 insertions(+), 30 deletions(-) [+] |
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--- a/rgweblogo/README~ Wed Sep 25 23:23:21 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,30 +0,0 @@ -This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool - -It generates sequence logos from fasta files such as the alignments generated by clustalw - -Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data - -**Installation** - -Make sure weblogo3 is installed in your system python and is available on the path for all your nodes - -Move the test data files to your galaxy root test-data -Move the xml file to a subdirectory of your tools folder (eg rgenetics/) and then add a line in your tool_conf.xml to point there. -Run -sh run_functional_tests.sh -id weblogo3 -to make sure the tests work - -then restart Galaxy and you should be good to go. - - -**Attribution** - -Source for the weblogo3 python executable is at http://weblogo.berkeley.edu - -Written by Ross Lazarus for the Rgenetics project - -Copyright Ross Lazarus at gmail com 2011 - -All rights reserved. - -Released under the LGPL - see http://www.gnu.org/copyleft/lesser.html