# HG changeset patch
# User fubar
# Date 1380165864 14400
# Node ID a2eb8f3b525d81c2fddfe308e7e2a350c48cd53c
# Parent  013ebb4e8794537cc472a4d03fe81d0014a38a32
Uploaded

diff -r 013ebb4e8794 -r a2eb8f3b525d rgweblogo/README~
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rgweblogo/README~	Wed Sep 25 23:24:24 2013 -0400
@@ -0,0 +1,30 @@
+This is a Galaxy tool wrapper for weblogo3 already available as a web app at the site below but neat as a Galaxy tool
+
+It generates sequence logos from fasta files such as the alignments generated by clustalw
+
+Note that the image for the help must be in static/images for it to show up on the tool form - it's the same image as goes in test-data
+
+**Installation**
+
+Make sure weblogo3 is installed in your system python and is available on the path for all your nodes
+
+Move the test data files to your galaxy root test-data
+Move the xml file to a subdirectory of your tools folder (eg rgenetics/) and then add a line in your tool_conf.xml to point there.
+Run
+sh run_functional_tests.sh -id weblogo3
+to make sure the tests work
+
+then restart Galaxy and you should be good to go.
+
+
+**Attribution**
+
+Source for the weblogo3 python executable is at http://weblogo.berkeley.edu
+
+Written by Ross Lazarus for the Rgenetics project
+
+Copyright Ross Lazarus at gmail com 2011
+
+All rights reserved.
+
+Released under the LGPL - see http://www.gnu.org/copyleft/lesser.html