Mercurial > repos > eric-rasche > apollo
annotate json2iframe.py @ 5:7610987e0c48 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author | eric-rasche |
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date | Wed, 01 Mar 2017 22:39:58 -0500 |
parents | 23ead6905145 |
children | f9a6e151b3b4 |
rev | line source |
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6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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1 #!/usr/bin/env python |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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2 import json |
1
f7d57e56f322
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents:
0
diff
changeset
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3 import base64 |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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4 import argparse |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
|
5 |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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6 if __name__ == '__main__': |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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7 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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8 parser.add_argument('apollo', help='Complete Apollo URL') |
5
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
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9 parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data') |
3
d4ae83dedb14
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents:
1
diff
changeset
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10 parser.add_argument('external_apollo_url') |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
|
11 |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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12 args = parser.parse_args() |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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13 |
3
d4ae83dedb14
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents:
1
diff
changeset
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14 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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15 data = json.load(args.json) |
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
|
16 |
1
f7d57e56f322
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 0f3c6e906c4d32843f451990b55bfa2954235a42
eric-rasche
parents:
0
diff
changeset
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17 # This is base64 encoded to get past the toolshed's filters. |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
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18 HTML_TPL = """ |
5
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
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19 <html> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
20 <head> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
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21 <title>Embedded Apollo Access</title> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
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22 <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
23 </head> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
24 <body> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
25 <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
26 </body> |
7610987e0c48
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
eric-rasche
parents:
4
diff
changeset
|
27 </html> |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
|
28 """ |
4
23ead6905145
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5-dirty
eric-rasche
parents:
3
diff
changeset
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29 # HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) |
0
6002cc0df04e
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
eric-rasche
parents:
diff
changeset
|
30 |
3
d4ae83dedb14
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4ac38d0b6dba1183f3e78eb5c224c7051064b4a5
eric-rasche
parents:
1
diff
changeset
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31 print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id']) |