Mercurial > repos > eric-rasche > apollo
diff json2iframe.py @ 0:6002cc0df04e draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 4e5a5af7689f1713c34a6ad9a9594c205e762fdd
| author | eric-rasche |
|---|---|
| date | Tue, 03 May 2016 13:38:55 -0400 |
| parents | |
| children | f7d57e56f322 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/json2iframe.py Tue May 03 13:38:55 2016 -0400 @@ -0,0 +1,39 @@ +#!/usr/bin/env python +import json +import argparse + +if __name__ == '__main__': + parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') + parser.add_argument('apollo', help='Complete Apollo URL') + parser.add_argument('json', type=file, help='JSON Data') + + args = parser.parse_args() + + + # https://cpt.tamu.edu/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= + data = json.load(args.json) + if len(data) > 1: + raise Exception("More than one organism listed. TODO. Contact esr@tamu.edu") + + HTML_TPL = """ +<html> + <head> + <title>Embedded Apollo Access</title> + <style type="text/css"> + body {{ + margin: 0; + }} + iframe {{ + border: 0; + width: 100%; + height: 100% + }} + </style> + </head> + <body> + <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> + </body> +</html> + """ + + print HTML_TPL.format(base_url=args.apollo, chrom="", orgId=data[0]['id'])