Mercurial > repos > eric-rasche > apollo
view json2iframe.py @ 5:7610987e0c48 draft
planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author | eric-rasche |
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date | Wed, 01 Mar 2017 22:39:58 -0500 |
parents | 23ead6905145 |
children | f9a6e151b3b4 |
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#!/usr/bin/env python import json import base64 import argparse if __name__ == '__main__': parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') parser.add_argument('apollo', help='Complete Apollo URL') parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data') parser.add_argument('external_apollo_url') args = parser.parse_args() # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= data = json.load(args.json) # This is base64 encoded to get past the toolshed's filters. HTML_TPL = """ <html> <head> <title>Embedded Apollo Access</title> <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style> </head> <body> <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> </body> </html> """ # HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id'])