Mercurial > repos > eric-rasche > apollo

comparison json2iframe.py @ 5:7610987e0c48 draft

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planemo upload for repository https://github.com/TAMU-CPT/galaxy-webapollo commit 29795b77c0d5c7894219b018a92c5ee7818096c3
author eric-rasche
date Wed, 01 Mar 2017 22:39:58 -0500
parents 23ead6905145
children f9a6e151b3b4
comparison
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4:23ead6905145 5:7610987e0c48
4 import argparse 4 import argparse
5 5
6 if __name__ == '__main__': 6 if __name__ == '__main__':
7 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') 7 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services')
8 parser.add_argument('apollo', help='Complete Apollo URL') 8 parser.add_argument('apollo', help='Complete Apollo URL')
9 parser.add_argument('json', type=file, help='JSON Data') 9 parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data')
10 parser.add_argument('external_apollo_url') 10 parser.add_argument('external_apollo_url')
11 11
12 args = parser.parse_args() 12 args = parser.parse_args()
13 13
14 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= 14 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks=
15 data = json.load(args.json) 15 data = json.load(args.json)
16 16
17 # This is base64 encoded to get past the toolshed's filters. 17 # This is base64 encoded to get past the toolshed's filters.
18 HTML_TPL = """ 18 HTML_TPL = """
19 <html><head><title>Embedded Apollo Access</title><style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style></head><body><iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe></body></html> 19 <html>
20 <head>
21 <title>Embedded Apollo Access</title>
22 <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style>
23 </head>
24 <body>
25 <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe>
26 </body>
27 </html>
20 """ 28 """
21 # HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) 29 # HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', ''))
22 30
23 print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id']) 31 print HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id'])