Mercurial > repos > dchristiany > frogs_data_manager

annotate data_manager_conf.xml @ 8:cac51639c40f draft

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author dchristiany
date Mon, 07 Oct 2019 04:55:50 -0400
parents 99b2dfb1fa1c
children 0d9cb5c5aa35
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1 <?xml version="1.0"?>
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2 <data_managers>
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3 <data_manager tool_file="data_manager/FROGS_data_manager.xml" id="frogs_data_manager">
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4 <data_table name="frogs_db">
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5 <output>
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6 <column name="value" />
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7 <column name="name" />
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8 <column name="path" output_ref="output">
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9 <move type="directory" relativize_symlinks="False">
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10 <source>#echo "/".join(str($path).split('/')[:-1])#</source>
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db/#echo str($path).split('/')[-2]#/</target>
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12 </move>
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str($path).split('/')[-2:])#</value_translation>
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14 <value_translation type="function">abspath</value_translation>
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15 </column>
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16 </output>
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17 </data_table>
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18 <data_table name="HVL_db">
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19 <output>
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20 <column name="value"/>
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21 <column name="name" />
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22 <column name="path" output_ref="output" >
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23 <move type="file">
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24 <!--source>${path}/${value}.tsv</source-->
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25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">HVL_db/</target>
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26 </move>
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27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/HVL_db/${value}.fasta</value_translation>
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28 <value_translation type="function">abspath</value_translation>
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29 </column>
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30 </output>
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31 </data_table>
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32 <data_table name="phiX_db">
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33 <output>
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34 <column name="value"/>
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35 <column name="name" />
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36 <column name="path" output_ref="output" >
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37 <move type="file">
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38 <!--source>${path}/${value}.tsv</source-->
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39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">phiX_db/</target>
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40 </move>
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41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/phiX_db/${value}.fasta</value_translation>
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42 <value_translation type="function">abspath</value_translation>
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43 </column>
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44 </output>
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45 </data_table>
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46 </data_manager>
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47 </data_managers>