Mercurial > repos > dchristiany > frogs_data_manager
diff data_manager_conf.xml @ 0:7caea40b2a30 draft
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
| author | dchristiany |
|---|---|
| date | Wed, 02 Oct 2019 11:00:08 -0400 |
| parents | |
| children | 13f4cbb20c31 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Wed Oct 02 11:00:08 2019 -0400 @@ -0,0 +1,47 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/data_manager.xml" id="frogs_data_manager"> + <data_table name="frogs_db"> + <output> + <column name="value"/> + <column name="name" /> + <column name="path" output_ref="output" > + <move type="directory"> + <source>#echo "/".join(str(${path}).split('/')[:-1])#</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str(${path}).split('/')[-2:])#</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="HVL_db"> + <output> + <column name="value"/> + <column name="name" /> + <column name="path" output_ref="output" > + <move type="file"> + <!--source>${path}/${value}.tsv</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">HVL_db</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/HVL_db/${value}.fasta</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="phiX_db"> + <output> + <column name="value"/> + <column name="name" /> + <column name="path" output_ref="output" > + <move type="file"> + <!--source>${path}/${value}.tsv</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">phiX_db</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/phiX_db/${value}.fasta</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>