Mercurial > repos > dchristiany > frogs_data_manager
diff data_manager_conf.xml @ 7:99b2dfb1fa1c draft
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
| author | dchristiany |
|---|---|
| date | Fri, 04 Oct 2019 08:57:45 -0400 |
| parents | d11bc4a8f596 |
| children | cac51639c40f |
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--- a/data_manager_conf.xml Thu Oct 03 10:29:39 2019 -0400 +++ b/data_manager_conf.xml Fri Oct 04 08:57:45 2019 -0400 @@ -2,15 +2,15 @@ <data_managers> <data_manager tool_file="data_manager/FROGS_data_manager.xml" id="frogs_data_manager"> <data_table name="frogs_db"> - <output> - <column name="value"/> +<output> + <column name="value" /> <column name="name" /> - <column name="path" output_ref="output" > - <move type="directory"> + <column name="path" output_ref="output"> + <move type="directory" relativize_symlinks="False"> <source>#echo "/".join(str($path).split('/')[:-1])#</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db/#echo str($path).split('/')[-2]#/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str($path).split('/')[-2:])#</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/#echo "/".join(str($path).split('/')[-2:])#</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -22,7 +22,7 @@ <column name="path" output_ref="output" > <move type="file"> <!--source>${path}/${value}.tsv</source--> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">HVL_db</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">HVL_db/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/HVL_db/${value}.fasta</value_translation> <value_translation type="function">abspath</value_translation> @@ -36,7 +36,7 @@ <column name="path" output_ref="output" > <move type="file"> <!--source>${path}/${value}.tsv</source--> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">phiX_db</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">phiX_db/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/phiX_db/${value}.fasta</value_translation> <value_translation type="function">abspath</value_translation>