Mercurial > repos > dchristiany > frogs_data_manager

annotate data_manager/FROGS_data_manager.xml @ 8:cac51639c40f draft

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author dchristiany
date Mon, 07 Oct 2019 04:55:50 -0400
parents 99b2dfb1fa1c
children 0d9cb5c5aa35
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1 <tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.07" tool_type="manage_data">
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2 <requirements>
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3 </requirements>
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4 <stdio>
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5 <exit_code range="1:" />
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6 </stdio>
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7 <command><![CDATA[
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8 python $__tool_directory__/FROGS_data_manager.py
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9 --database="$database.database"
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10 --output "$output"
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11 ]]></command>
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12 <inputs>
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13 <conditional name="database">
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14 <param name="database" type="select" label="Please select a database to update">
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15 <option value="frogs_db_data">FROGS database (FROGS Affiliation OTU)</option>
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16 <option value="HVL_db_data">HVL database (FROGS Affiliation postprocess)</option>
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17 <option value="phiX_db_data">phiX database (FROGS Filters)</option>
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18 </param>
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19 <when value="frogs_db_data"/>
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20 <when value="HVL_db_data">
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21 </when>
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22 <when value="phiX_db_data">
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23 </when>
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24 </conditional>
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25 </inputs>
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26 <outputs>
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27 <data name="output" format="data_manager_json"/>
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28 </outputs>
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29 <help><![CDATA[
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30 TODO: Fill in help.
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31 ]]></help>
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32 </tool>