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annotate data_manager/FROGS_data_manager.xml @ 5:ac4fb9d97a51 draft

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author dchristiany
date Thu, 03 Oct 2019 05:10:33 -0400
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children d11bc4a8f596
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1 <tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.03" tool_type="manage_data">
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2 <requirements>
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3 </requirements>
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4 <stdio>
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5 <exit_code range="1:" />
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6 </stdio>
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7 <command detect_errors="exit_code"><![CDATA[
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8 python $__tool_directory__/FROGS_data_manager.py
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9 --database="$database.database"
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10 --output "$output"
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11 ]]></command>
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12 <inputs>
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13 <conditional name="database">
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14 <param name="database" type="select" label="Please select a database to update">
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15 <option value="frogs_db_data">FROGS database (FROGS Affiliation OTU)</option>
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16 <option value="HVL_db_data">HVL database (FROGS Affiliation postprocess)</option>
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17 <option value="phiX_db_data">phiX database (FROGS Filters)</option>
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18 </param>
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19 <when value="frogs_db_data"/>
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20 <when value="HVL_db_data">
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21 <param name="resource" type="select" label="Choose the resource to create/update">
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22 <option value="unite_7.1_ITS1">UNITE 7.1 ITS1</option>
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23 </param>
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24 </when>
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25 <when value="phiX_db_data">
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26 <param name="resource" type="select" label="Choose the resource to create/update">
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27 <option value="phiX">phiX</option>
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28 </param>
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29 </when>
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30 </conditional>
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31 </inputs>
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32 <outputs>
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33 <data name="output" format="data_manager_json"/>
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34 </outputs>
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35 <help><![CDATA[
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36 TODO: Fill in help.
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37 ]]></help>
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38 </tool>