diff data_manager/FROGS_data_manager.xml @ 0:7caea40b2a30 draft

planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/FROGS_data_manager.xml	Wed Oct 02 11:00:08 2019 -0400
@@ -0,0 +1,36 @@
+<tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.02">
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python $__tool_directory__/FROGS_data_manager.py
+            --database="$database.database"
+            --resource="$database.resource"
+            --output "$output"
+    ]]></command>
+    <inputs>
+        <conditional name="database">
+            <param name="database" type="select" label="Please select a database to update">
+                <option value="frogs_db_data">FROGS database (FROGS Affiliation OTU)</option>
+                <option value="HVL_db_data">HVL database (FROGS Affiliation postprocess)</option>
+                <option value="phiX_db_data">phiX database (FROGS Filters)</option>
+            </param>
+            <when value="frogs_db_data"/>
+            <when value="HVL_db_data">
+                <param name="resource" type="select" label="Choose the resource to create/update">
+                    <option value="unite_7.1_ITS1">UNITE 7.1 ITS1</option>
+                </param>
+            </when>
+            <when value="phiX_db_data">
+                <param name="resource" type="select" label="Choose the resource to create/update">
+                    <option value="phiX">phiX</option>
+                </param>
+            </when>
+        </conditional>
+    </inputs>
+    <outputs>
+        <data name="output" format="data_manager_json"/>
+    </outputs>
+    <help><![CDATA[
+        TODO: Fill in help.
+    ]]></help>
+</tool>
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