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view data_manager/FROGS_data_manager.xml @ 8:cac51639c40f draft

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planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
author dchristiany
date Mon, 07 Oct 2019 04:55:50 -0400
parents 99b2dfb1fa1c
children 0d9cb5c5aa35
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<tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.07" tool_type="manage_data">
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
        python $__tool_directory__/FROGS_data_manager.py
            --database="$database.database"
            --output "$output"
    ]]></command>
    <inputs>
        <conditional name="database">
            <param name="database" type="select" label="Please select a database to update">
                <option value="frogs_db_data">FROGS database (FROGS Affiliation OTU)</option>
                <option value="HVL_db_data">HVL database (FROGS Affiliation postprocess)</option>
                <option value="phiX_db_data">phiX database (FROGS Filters)</option>
            </param>
            <when value="frogs_db_data"/>
            <when value="HVL_db_data">
            </when>
            <when value="phiX_db_data">
            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="output" format="data_manager_json"/>
    </outputs>
    <help><![CDATA[
        TODO: Fill in help.
    ]]></help>
</tool>