Mercurial > repos > bgruening > hicexplorer_hicsummatrices
annotate test-data/raw_qc_report @ 14:34ea556ba897 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
author | iuc |
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date | Mon, 09 Dec 2019 10:37:59 +0000 |
parents | 673c3280e576 |
children |
rev | line source |
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7
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
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1 |
14
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
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2 File matrix.cool |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
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3 Sequenced reads 983 |
7
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
4 Min rest. site distance 300 |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
5 Max library insert size 1000 |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
6 |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
7 # count (percentage w.r.t. total sequenced reads) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
8 Pairs mappable, unique and high quality 300 (30.52) |
14
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
9 Hi-C contacts 215 (21.87) |
7
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
10 One mate unmapped 506 (51.48) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
11 One mate not unique 13 (1.32) |
14
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
12 Low mapping quality 164 (16.68) |
7
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
13 |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
14 # count (percentage w.r.t. mappable, unique and high quality pairs) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
15 dangling end 0 (0.00) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
16 self ligation (removed) 0 (0.00) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
17 One mate not close to rest site 0 (0.00) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
18 same fragment 85 (28.33) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
19 self circle 0 (0.00) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
20 duplicated pairs 0 (0.00) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
21 |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
22 # count (percentage w.r.t. total valid pairs used) |
b712d550c29a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
23 inter chromosomal 24 (11.16) |
14
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
24 Intra short range (< 20kb) 61 (28.37) |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
25 Intra long range (>= 20kb) 130 (60.47) |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
26 Read pair type: inward pairs 42 (19.53) |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
27 Read pair type: outward pairs 66 (30.70) |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
28 Read pair type: left pairs 48 (22.33) |
34ea556ba897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
iuc
parents:
9
diff
changeset
|
29 Read pair type: right pairs 35 (16.28) |