diff test-data/raw_qc_report @ 14:34ea556ba897 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"

--- a/test-data/raw_qc_report	Sat Jun 09 15:04:09 2018 -0400
+++ b/test-data/raw_qc_report	Mon Dec 09 10:37:59 2019 +0000
@@ -1,15 +1,15 @@
 
-File	matrix.h5		
-Pairs considered	983		
+File	matrix.cool		
+Sequenced reads	983		
 Min rest. site distance	300		
 Max library insert size	1000		
 
 #	count	(percentage w.r.t. total sequenced reads)
 Pairs mappable, unique and high quality	300	(30.52)
-Pairs used	215	(21.87)
+Hi-C contacts	215	(21.87)
 One mate unmapped	506	(51.48)
 One mate not unique	13	(1.32)
-One mate low quality	164	(16.68)
+Low mapping quality	164	(16.68)
 
 #	count	(percentage w.r.t. mappable, unique and high quality pairs)
 dangling end	0	(0.00)
@@ -21,9 +21,9 @@
 
 #	count	(percentage w.r.t. total valid pairs used)
 inter chromosomal	24	(11.16)
-short range < 20kb	61	(28.37)
-long range	130	(60.47)
-inward pairs	42	(19.53)
-outward pairs	66	(30.70)
-left pairs	48	(22.33)
-right pairs	35	(16.28)
+Intra short range (< 20kb)	61	(28.37)
+Intra long range (>= 20kb)	130	(60.47)
+Read pair type: inward pairs	42	(19.53)
+Read pair type: outward pairs	66	(30.70)
+Read pair type: left pairs	48	(22.33)
+Read pair type: right pairs	35	(16.28)