Mercurial > repos > bgruening > hicexplorer_hicsummatrices

comparison test-data/raw_qc_report @ 14:34ea556ba897 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 9e4e8de0e003fc15f5bae3648232c2a8a57e6391"
author iuc
date Mon, 09 Dec 2019 10:37:59 +0000
parents 673c3280e576
children
comparison
equal deleted inserted replaced
13:2f18082f828b 14:34ea556ba897
1 1
2 File matrix.h5 2 File matrix.cool
3 Pairs considered 983 3 Sequenced reads 983
4 Min rest. site distance 300 4 Min rest. site distance 300
5 Max library insert size 1000 5 Max library insert size 1000
6 6
7 # count (percentage w.r.t. total sequenced reads) 7 # count (percentage w.r.t. total sequenced reads)
8 Pairs mappable, unique and high quality 300 (30.52) 8 Pairs mappable, unique and high quality 300 (30.52)
9 Pairs used 215 (21.87) 9 Hi-C contacts 215 (21.87)
10 One mate unmapped 506 (51.48) 10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32) 11 One mate not unique 13 (1.32)
12 One mate low quality 164 (16.68) 12 Low mapping quality 164 (16.68)
13 13
14 # count (percentage w.r.t. mappable, unique and high quality pairs) 14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end 0 (0.00) 15 dangling end 0 (0.00)
16 self ligation (removed) 0 (0.00) 16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00) 17 One mate not close to rest site 0 (0.00)
19 self circle 0 (0.00) 19 self circle 0 (0.00)
20 duplicated pairs 0 (0.00) 20 duplicated pairs 0 (0.00)
21 21
22 # count (percentage w.r.t. total valid pairs used) 22 # count (percentage w.r.t. total valid pairs used)
23 inter chromosomal 24 (11.16) 23 inter chromosomal 24 (11.16)
24 short range < 20kb 61 (28.37) 24 Intra short range (< 20kb) 61 (28.37)
25 long range 130 (60.47) 25 Intra long range (>= 20kb) 130 (60.47)
26 inward pairs 42 (19.53) 26 Read pair type: inward pairs 42 (19.53)
27 outward pairs 66 (30.70) 27 Read pair type: outward pairs 66 (30.70)
28 left pairs 48 (22.33) 28 Read pair type: left pairs 48 (22.33)
29 right pairs 35 (16.28) 29 Read pair type: right pairs 35 (16.28)