Mercurial > repos > bgruening > hicexplorer_hicsummatrices

annotate test-data/raw_qc_report @ 9:673c3280e576 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 683d64a78adb3ff671f750d969d9daee5108169d
author iuc
date Wed, 07 Mar 2018 02:29:16 -0500
parents b712d550c29a
children 34ea556ba897
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
1
9
673c3280e576 planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 683d64a78adb3ff671f750d969d9daee5108169d
iuc
parents: 7
diff changeset
2 File matrix.h5
7
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
3 Pairs considered 983
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
4 Min rest. site distance 300
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
5 Max library insert size 1000
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
6
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
7 # count (percentage w.r.t. total sequenced reads)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
8 Pairs mappable, unique and high quality 300 (30.52)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
9 Pairs used 215 (21.87)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
10 One mate unmapped 506 (51.48)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
11 One mate not unique 13 (1.32)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
12 One mate low quality 164 (16.68)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
13
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
15 dangling end 0 (0.00)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
16 self ligation (removed) 0 (0.00)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
17 One mate not close to rest site 0 (0.00)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
18 same fragment 85 (28.33)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
19 self circle 0 (0.00)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
20 duplicated pairs 0 (0.00)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
21
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
22 # count (percentage w.r.t. total valid pairs used)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
23 inter chromosomal 24 (11.16)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
24 short range < 20kb 61 (28.37)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
25 long range 130 (60.47)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
26 inward pairs 42 (19.53)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
27 outward pairs 66 (30.70)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
28 left pairs 48 (22.33)
b712d550c29a planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff changeset
29 right pairs 35 (16.28)