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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="blast+" version="2.2.28">
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9
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4 <repository changeset_revision="5a449da71d08" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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0
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5 </package>
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6 <package name="hmmer " version="2.3.2">
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6
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7 <repository changeset_revision="64510d86d77d" name="package_hmmer_2_3_2" owner="lionelguy" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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0
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8 </package>
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9 <package name="hmmer" version="3.0">
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9
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10 <repository changeset_revision="a44693e3a2c4" name="package_hmmer_3_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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0
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11 </package>
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12 <package name="muscle" version="3.8.31">
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6
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13 <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5
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14 </package>
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15 <package name="biopython" version="1.62">
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6
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16 <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5
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17 </package>
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18 <package name="antismash_python_deps" version="2.0.2">
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7
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19 <install version="1.0">
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5
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20 <actions>
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21 <action type="setup_virtualenv">helperlibs==0.1.2
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22 straight.plugin==1.4.0-post-1</action>
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5
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23 </actions>
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24 </install>
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25 <readme>
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6
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26 AntiSmash python dependencies (helperlibs and straight.plugin)
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5
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27 </readme>
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0
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28 </package>
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29 <package name="antismash" version="2.0.2">
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30 <install version="1.0">
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31 <actions_group>
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32 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
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8
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33 <actions architecture="x86_64" os="darwin">
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34 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
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35 <action type="move_directory_files">
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36 <source_directory>.</source_directory>
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37 <destination_directory>$INSTALL_DIR</destination_directory>
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38 </action>
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39 <action type="chmod">
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40 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
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41 </action>
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42 </actions>
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43 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
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44 <actions architecture="i386" os="darwin">
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0
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45 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
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46 <action type="move_directory_files">
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47 <source_directory>.</source_directory>
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48 <destination_directory>$INSTALL_DIR</destination_directory>
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49 </action>
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50 <action type="chmod">
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51 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
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52 </action>
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53 </actions>
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54 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
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6
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55 <actions architecture="x86_64" os="linux">
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7
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56 <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
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0
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57 <action type="move_directory_files">
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58 <source_directory>antismash-2.0.2/*</source_directory>
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59 <destination_directory>$INSTALL_DIR</destination_directory>
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60 </action>
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61 <action type="chmod">
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62 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
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63 </action>
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3
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64 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action>
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65 <action type="move_directory_files">
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66 <source_directory>.</source_directory>
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8
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67 <destination_directory>$INSTALL_DIR/antismash/generic_modules/clusterblast</destination_directory>
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3
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68 </action>
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0
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69 </actions>
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70 <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. -->
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6
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71 <actions architecture="i386" os="linux">
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0
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72 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action>
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73 <action type="move_directory_files">
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74 <source_directory>.</source_directory>
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75 <destination_directory>$INSTALL_DIR</destination_directory>
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76 </action>
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77 <action type="chmod">
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78 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
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79 </action>
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80 </actions>
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1
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81
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3
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82 <actions>
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8
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83
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3
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84 </actions>
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1
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85
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0
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86 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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87 <action type="set_environment">
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6
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88 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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0
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89 </action>
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90 </actions_group>
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91 </install>
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92 <readme>
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93 AntiSmash installation with all dependencies.
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94 </readme>
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95 </package>
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96 </tool_dependency>
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