|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="blast+" version="2.2.28">
|
|
|
4 <repository changeset_revision="d794cb2b0f45" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="hmmer " version="2.3.2">
|
|
|
7 <repository changeset_revision="64510d86d77d" name="package_hmmer_2_3_2" owner="lionelguy" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
8 </package>
|
|
|
9 <package name="hmmer" version="3.0">
|
|
|
10 <repository changeset_revision="3bc37773c609" name="package_hmmer_3_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
11 </package>
|
|
|
12 <package name="muscle" version="3.8.31">
|
|
|
13 <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
14 </package>
|
|
|
15 <package name="antismash" version="2.0.2">
|
|
|
16 <install version="1.0">
|
|
|
17 <actions_group>
|
|
|
18 <!-- Download the binaries for MUSCLE compatible with 64-bit OSX. -->
|
|
|
19 <actions os="darwin">
|
|
|
20 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antiSMASH2.0.2_macosx.zip</action>
|
|
|
21 <action type="move_directory_files">
|
|
|
22 <source_directory>.</source_directory>
|
|
|
23 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
24 </action>
|
|
|
25 <action type="chmod">
|
|
|
26 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
|
|
|
27 </action>
|
|
|
28 </actions>
|
|
|
29 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
|
|
|
30 <actions architecture="x86_64" os="linux">
|
|
|
31 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
|
|
|
32 <action type="move_directory_files">
|
|
|
33 <source_directory>.</source_directory>
|
|
|
34 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
35 </action>
|
|
|
36 <action type="chmod">
|
|
|
37 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
|
|
|
38 </action>
|
|
3
|
39 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action>
|
|
|
40 <action type="move_directory_files">
|
|
|
41 <source_directory>.</source_directory>
|
|
|
42 <destination_directory>$INSTALL_DIR/antismash/generic_modules/clusterblast</destination_directory>
|
|
|
43 </action>
|
|
0
|
44 </actions>
|
|
|
45 <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. -->
|
|
|
46 <actions architecture="i386" os="linux">
|
|
|
47 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action>
|
|
|
48 <action type="move_directory_files">
|
|
|
49 <source_directory>.</source_directory>
|
|
|
50 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
51 </action>
|
|
|
52 <action type="chmod">
|
|
|
53 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
|
|
|
54 </action>
|
|
|
55 </actions>
|
|
1
|
56
|
|
3
|
57 <actions>
|
|
|
58 <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
|
|
|
59 <action type="move_directory_files">
|
|
|
60 <source_directory>.</source_directory>
|
|
|
61 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
62 </action>
|
|
|
63 <action type="chmod">
|
|
|
64 <file mode="750">$INSTALL_DIR/run_antismash.py</file>
|
|
|
65 </action>
|
|
|
66 </actions>
|
|
1
|
67
|
|
|
68
|
|
0
|
69 <action type="setup_virtualenv">biopython=1.62
|
|
|
70 helperlibs=0.1.2
|
|
|
71 straight.plugin=1.4.0-post-1</action>
|
|
|
72
|
|
|
73 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
|
|
|
74 <action type="set_environment">
|
|
|
75 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
|
|
|
76 </action>
|
|
|
77 </actions_group>
|
|
|
78 </install>
|
|
|
79 <readme>
|
|
|
80 AntiSmash installation with all dependencies.
|
|
|
81 </readme>
|
|
|
82 </package>
|
|
|
83 </tool_dependency>
|
