changeset 6:acf3fd6c5c8e draft

Uploaded

--- a/tool_dependencies.xml	Fri Oct 04 04:46:02 2013 -0400
+++ b/tool_dependencies.xml	Fri Oct 04 04:47:02 2013 -0400
@@ -1,19 +1,19 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="blast+" version="2.2.28">
-        <repository name="package_blast_plus_2_2_28" owner="iuc" />
+        <repository changeset_revision="d794cb2b0f45" name="package_blast_plus_2_2_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="hmmer " version="2.3.2">
-        <repository name="package_hmmer_2_3_2" owner="lionelguy" />
+        <repository changeset_revision="64510d86d77d" name="package_hmmer_2_3_2" owner="lionelguy" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="hmmer" version="3.0">
-        <repository name="package_hmmer_3_0" owner="jjohnson" />
+        <repository changeset_revision="3bc37773c609" name="package_hmmer_3_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="muscle" version="3.8.31">
-        <repository name="package_muscle_3_8_31" owner="bgruening" />
+        <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="biopython" version="1.62">
-        <repository name="package_biopython_1_62" owner="biopython" />
+        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="antismash_python_deps" version="2.0.2">
         <install version="0.4">
@@ -22,9 +22,8 @@
 straight.plugin=1.4.0-post-1</action>
             </actions>
         </install>
-        </install>
         <readme>
-            AntiSmash python dependencies.
+            AntiSmash python dependencies (helperlibs and straight.plugin)
         </readme>
     </package>
     <package name="antismash" version="2.0.2">
@@ -42,7 +41,7 @@
                     </action>
                 </actions>
                 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
-                <actions os="linux" architecture="x86_64">
+                <actions architecture="x86_64" os="linux">
                     <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>
@@ -58,7 +57,7 @@
                     </action>
                 </actions>
                 <!-- Download the binaries for AntiSmash compatible with 32-bit Linux. -->
-                <actions os="linux" architecture="i386">
+                <actions architecture="i386" os="linux">
                     <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.i686.tar.bz2</action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>
@@ -82,7 +81,7 @@
 
                 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                 </action>
             </actions_group>
         </install>
@@ -91,4 +90,3 @@
         </readme>
     </package>
 </tool_dependency>
-