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8
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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20
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3 <set_environment version="1.0">
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21
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4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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20
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5 </set_environment>
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95
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6 <package name="samtools" version="0.1.12">
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79
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7 <install version="1.0">
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8 <actions>
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95
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9 <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/samtools/samtools</action>
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10 <action type="shell_command">chmod ago+x samtools</action>
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89
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11 <action type="move_file">
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85
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12 <source>samtools</source>
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79
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13 <destination>$INSTALL_DIR/bin</destination>
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14 </action>
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95
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15 <action type="download_by_url">http://ec2-184-73-120-244.compute-1.amazonaws.com/modENCODE_Galaxy/tool_dependencies/samtools/maq2sam-long</action>
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98
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16 <action type="shell_command">chmod ago+x maq2sam-long</action>
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79
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17 <action type="move_file">
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95
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18 <source>maq2sam-long</source>
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79
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19 <destination>$INSTALL_DIR/bin</destination>
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89
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20 </action>
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79
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21 <action type="set_environment">
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22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme>
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27 </package>
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8
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28 </tool_dependency>
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