Mercurial > repos > zzhou > bamedit

diff tool_dependencies.xml @ 89:94fa04d0c233 draft

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Uploaded
author zzhou
date Tue, 27 Nov 2012 11:28:46 -0500
parents 67af3495e872
children bf6b8378858c
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Nov 27 11:17:07 2012 -0500
+++ b/tool_dependencies.xml	Tue Nov 27 11:28:46 2012 -0500
@@ -6,19 +6,17 @@
     <package name="samtools" version="0.1.12">
         <install version="1.0">
             <actions>
-                <!--<action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
+                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2</action>
                 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
-                <action type="shell_command">make</action>-->
-		<action type="shell_command">cp samtools \$INSTALL_DIR/bin</action>
-		<action type="shell_command">cp maq2sam-long \$INSTALL_DIR/bin</action>
-                <!--<action type="move_file">
+                <action type="shell_command">make</action>
+                <action type="move_file">
                     <source>samtools</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
-                    <source>maq2sam-long</source>
+                    <source>misc/maq2sam-long</source>
                     <destination>$INSTALL_DIR/bin</destination>
-                </action>-->
+                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>