Mercurial > repos > yhoogstrate > featurecounts_valid_gff

changeset 20:2adbc953bc47

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Uploaded
author yhoogstrate
date Tue, 19 Nov 2013 09:59:12 -0500
parents f775862eaaaa
children cf4485c5f24d
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Nov 19 09:51:13 2013 -0500
+++ b/tool_dependencies.xml	Tue Nov 19 09:59:12 2013 -0500
@@ -3,7 +3,7 @@
 	<package name="featurecounts_valid_gff" version="1.4.0.1">
 		<install version="1.0">
 			<actions>
-				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff 2> /dev/null ; make -f featurecounts-valid-gff/src/Makefile.Linux 2> /dev/null</action>
+				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff 2> /dev/null ; cd featurecounts-valid-gff/src/ 2> /dev/null ; make -f Makefile.Linux 2> /dev/null ; cd ../../ 2> /dev/null</action>
 				<action type="move_file">
 					<source>featurecounts-valid-gff/bin/featureCounts</source>
 					<destination>$INSTALL_DIR/bin</destination>
@@ -11,7 +11,7 @@
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 					<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-				</action>    
+				</action>
 			</actions>
 		</install>
 		<readme>