Mercurial > repos > yhoogstrate > featurecounts_valid_gff

view tool_dependencies.xml @ 20:2adbc953bc47

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Uploaded
author yhoogstrate
date Tue, 19 Nov 2013 09:59:12 -0500
parents f775862eaaaa
children cf4485c5f24d
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line source

<?xml version="1.0"?>
<tool_dependency>
	<package name="featurecounts_valid_gff" version="1.4.0.1">
		<install version="1.0">
			<actions>
				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff 2> /dev/null ; cd featurecounts-valid-gff/src/ 2> /dev/null ; make -f Makefile.Linux 2> /dev/null ; cd ../../ 2> /dev/null</action>
				<action type="move_file">
					<source>featurecounts-valid-gff/bin/featureCounts</source>
					<destination>$INSTALL_DIR/bin</destination>
				</action>
				<action type="set_environment">
					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
					<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
				</action>
			</actions>
		</install>
		<readme>
			Downloads and installs featureCounts-valid-gff; requires SVN to be installed!
		</readme>
	</package>
</tool_dependency>