Mercurial > repos > yhoogstrate > featurecounts_valid_gff

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author yhoogstrate
date Wed, 27 Jan 2016 09:55:09 -0500
parents 6637aba9c1d4
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<?xml version="1.0"?>
<tool_dependency>
	<package name="samtools" version="0.1.19">
		<repository changeset_revision="632f1a03db92" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
	</package>
	<package name="featurecounts_valid_gff" version="1.4.0.1">
		<install version="1.0">
			<actions>
				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts_valid_gff &amp;&amp; cd featurecounts_valid_gff/src/ &amp;&amp; make -f Makefile.Linux &amp;&amp; cd ../../</action>
				<action type="move_file">
					<source>bin/featureCounts</source>
					<destination>$INSTALL_DIR/bin</destination>
				</action>
				<action type="set_environment">
					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
					<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
				</action>
			</actions>
		</install>
		<readme>
			Downloads and installs featureCounts-valid-gff; requires SVN to be installed!
		</readme>
	</package>
</tool_dependency>