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1
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="samtools" version="0.1.19">
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4 <repository changeset_revision="632f1a03db92" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="featurecounts_valid_gff" version="1.4.0.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts_valid_gff && cd featurecounts_valid_gff/src/ && make -f Makefile.Linux && cd ../../</action>
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10 <action type="move_file">
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11 <source>bin/featureCounts</source>
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12 <destination>$INSTALL_DIR/bin</destination>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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16 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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20
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 Downloads and installs featureCounts-valid-gff; requires SVN to be installed!
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22 </readme>
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23 </package>
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24 </tool_dependency>
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