# HG changeset patch
# User yhoogstrate
# Date 1384873152 18000
# Node ID 2adbc953bc4721980a6d7b49ff0f168210bbfe9e
# Parent  f775862eaaaadf3f5afa9b6e61f9d3fbbf440f42
Uploaded

diff -r f775862eaaaa -r 2adbc953bc47 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Nov 19 09:51:13 2013 -0500
+++ b/tool_dependencies.xml	Tue Nov 19 09:59:12 2013 -0500
@@ -3,7 +3,7 @@
 	<package name="featurecounts_valid_gff" version="1.4.0.1">
 		<install version="1.0">
 			<actions>
-				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff 2> /dev/null ; make -f featurecounts-valid-gff/src/Makefile.Linux 2> /dev/null</action>
+				<action type="shell_command">svn checkout https://featurecounts-valid-gff.googlecode.com/svn/trunk/ featurecounts-valid-gff 2> /dev/null ; cd featurecounts-valid-gff/src/ 2> /dev/null ; make -f Makefile.Linux 2> /dev/null ; cd ../../ 2> /dev/null</action>
 				<action type="move_file">
 					<source>featurecounts-valid-gff/bin/featureCounts</source>
 					<destination>$INSTALL_DIR/bin</destination>
@@ -11,7 +11,7 @@
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 					<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-				</action>    
+				</action>
 			</actions>
 		</install>
 		<readme>