Mercurial > repos > yhoogstrate > featurecounts
changeset 12:b2c1799ed8d1 draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259
| author | yhoogstrate |
|---|---|
| date | Mon, 01 Jun 2015 07:07:09 -0400 |
| parents | 0eea16542649 |
| children | 89d097ed772c |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 18 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon May 18 04:48:43 2015 -0400 +++ b/tool_dependencies.xml Mon Jun 01 07:07:09 2015 -0400 @@ -1,22 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="featurecounts" version="1.4.6.p1"> - <install version="1.0"> - <actions> - <action type="shell_command">wget http://garr.dl.sourceforge.net/project/subread/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz && tar -zxvf subread-1.4.6-p1-source.tar.gz && cd subread-1.4.6-p1-source/src/ && make -f Makefile.Linux && cd ../../</action> - <action type="move_file"> - <source>../subread-1.4.6-p1-source/bin/featureCounts</source> - <destination>$INSTALL_DIR/bin/</destination> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - <!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>--> - </action> - </actions> - </install> - <readme> - Downloads and installs featureCounts; requires WGET, GNU AUTOTOOLS and TAR to be installed. - </readme> + <repository changeset_revision="4274314879c8" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="featurecounts2bed" version="1.0.0"> @@ -27,8 +12,8 @@ <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file> </action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable> </action> </actions> </install>