# HG changeset patch
# User yhoogstrate
# Date 1433156829 14400
# Node ID b2c1799ed8d1ce7da23e13d8ccd7941e6a410311
# Parent  0eea16542649e9741e0a077ce12808a2424807db
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259

diff -r 0eea16542649 -r b2c1799ed8d1 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon May 18 04:48:43 2015 -0400
+++ b/tool_dependencies.xml	Mon Jun 01 07:07:09 2015 -0400
@@ -1,22 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<package name="featurecounts" version="1.4.6.p1">
-		<install version="1.0">
-			<actions>
-				<action type="shell_command">wget http://garr.dl.sourceforge.net/project/subread/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz &amp;&amp; tar -zxvf subread-1.4.6-p1-source.tar.gz &amp;&amp; cd subread-1.4.6-p1-source/src/ &amp;&amp; make -f Makefile.Linux &amp;&amp; cd ../../</action>
-				<action type="move_file">
-					<source>../subread-1.4.6-p1-source/bin/featureCounts</source>
-					<destination>$INSTALL_DIR/bin/</destination>
-				</action>
-				<action type="set_environment">
-					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-					<!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>-->
-				</action>
-			</actions>
-		</install>
-		<readme>
-			Downloads and installs featureCounts; requires WGET, GNU AUTOTOOLS and TAR to be installed.
-		</readme>
+		<repository changeset_revision="4274314879c8" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 	</package>
 	
 	<package name="featurecounts2bed" version="1.0.0">
@@ -27,8 +12,8 @@
 					<file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
 				</action>
 				<action type="set_environment">
-					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-					<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+					<environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
 				</action>
 			</actions>
 		</install>