Mercurial > repos > yating-l > data_manager_fetch_reference_data
changeset 6:2eb398f3649c draft
planemo upload
| author | yating-l |
|---|---|
| date | Wed, 03 May 2017 17:49:01 -0400 |
| parents | 2f926e7d623d |
| children | 83362eed7868 |
| files | data_manager/fetch_reference_data.py |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/fetch_reference_data.py Wed May 03 17:43:57 2017 -0400 +++ b/data_manager/fetch_reference_data.py Wed May 03 17:49:01 2017 -0400 @@ -46,10 +46,10 @@ tarinfo for tarinfo in tar.getmembers() if sequence_id in tarinfo.name ] - tar.extractall(members=subdir) - GlimmerHMM_TRAINED_DIR = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id) + tar.extractall(path=downloadpath, members=subdir) + glimmerhmm_trained_dir = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id) glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id) - shutil.copytree(GlimmerHMM_TRAINED_DIR, glimmerhmm_trained_target_dir) + shutil.copytree(glimmerhmm_trained_dir, glimmerhmm_trained_target_dir) data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir) _add_data_table_entry(data_manager_dict, data_table_entry)