Mercurial > repos > trinity_ctat > ctat_genome_resource_libs_data_manager_3
changeset 47:fb13fae2c873 draft
adding a print statement.
author | trinity_ctat |
---|---|
date | Thu, 25 Oct 2018 21:18:27 -0400 |
parents | f4f48007db67 |
children | d4b5258f244b |
files | data_manager/add_ctat_resource_lib.py |
diffstat | 1 files changed, 1 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager/add_ctat_resource_lib.py Thu Oct 25 20:55:44 2018 -0400 +++ b/data_manager/add_ctat_resource_lib.py Thu Oct 25 21:18:27 2018 -0400 @@ -729,6 +729,7 @@ os.remove(gmap_success_full_file_path) command = "gmap_build -D {:s}/ -d ref_genome.fa.gmap -k 13 {:s}/ref_genome.fa 2>&1".format( \ genome_build_directory, genome_build_directory) + print "Doing a gmap_build with the following command:\n\t{:s}\n".format(command) try: # to send the gmap_build command. subprocess.check_call(command, shell=True) except subprocess.CalledProcessError: