# HG changeset patch # User trinity_ctat # Date 1540516707 14400 # Node ID fb13fae2c8737d61959d70a30d30e9aa2b736bd6 # Parent f4f48007db67c2f16517e9824b890ae941a4774a adding a print statement. diff -r f4f48007db67 -r fb13fae2c873 data_manager/add_ctat_resource_lib.py --- a/data_manager/add_ctat_resource_lib.py Thu Oct 25 20:55:44 2018 -0400 +++ b/data_manager/add_ctat_resource_lib.py Thu Oct 25 21:18:27 2018 -0400 @@ -729,6 +729,7 @@ os.remove(gmap_success_full_file_path) command = "gmap_build -D {:s}/ -d ref_genome.fa.gmap -k 13 {:s}/ref_genome.fa 2>&1".format( \ genome_build_directory, genome_build_directory) + print "Doing a gmap_build with the following command:\n\t{:s}\n".format(command) try: # to send the gmap_build command. subprocess.check_call(command, shell=True) except subprocess.CalledProcessError: