Mercurial > repos > trinity_ctat > ctat_genome_resource_libs_data_manager_3

changeset 48:d4b5258f244b draft

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Uploaded
author trinity_ctat
date Thu, 25 Oct 2018 21:44:51 -0400
parents fb13fae2c873
children c47ac2deaaf8
files data_manager/add_ctat_resource_lib.py
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/add_ctat_resource_lib.py	Thu Oct 25 21:18:27 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.py	Thu Oct 25 21:44:51 2018 -0400
@@ -730,6 +730,7 @@
         command = "gmap_build -D {:s}/ -d ref_genome.fa.gmap -k 13 {:s}/ref_genome.fa 2>&1".format( \
         	   genome_build_directory, genome_build_directory)
         print "Doing a gmap_build with the following command:\n\t{:s}\n".format(command)
+        sys.stdout.flush()
         try: # to send the gmap_build command.
             subprocess.check_call(command, shell=True)
         except subprocess.CalledProcessError: