Mercurial > repos > trinity_ctat > ctat_genome_resource_libs_data_manager_3
changeset 14:945ddfedaafd draft
Add the mutation lib stuff back in.
| author | trinity_ctat |
|---|---|
| date | Fri, 19 Oct 2018 17:17:05 -0400 |
| parents | bef035c4468f |
| children | 75a494c00321 |
| files | data_manager/add_ctat_resource_lib.xml |
| diffstat | 1 files changed, 10 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager/add_ctat_resource_lib.xml Fri Oct 19 17:11:42 2018 -0400 +++ b/data_manager/add_ctat_resource_lib.xml Fri Oct 19 17:17:05 2018 -0400 @@ -16,6 +16,16 @@ #if str($genome_resource_library.build_type) == "specify_built_location": --build_location="${genome_resource_library.built_library_location}" #end if + #if str($mutation_lib_options.mutation_build) == "true": + --download_mutation_resources_url="${mutation_lib_options.source_url}" + --cosmic_resources_location="${mutation_lib_options.cosmic_files_location}" + #if str($mutation_lib_options.force_download) == "true": + --new_mutation_download + #end if + #if str($mutation_lib_options.redo_integration) == "true": + --new_mutation_integration + #end if + #end if ]]> </command> <inputs>