# HG changeset patch
# User trinity_ctat
# Date 1539983825 14400
# Node ID 945ddfedaafd49a1af4e16df5c7f24b902612f52
# Parent  bef035c4468f24a7abc8f1432e70b8b810ffe162
Add the mutation lib stuff back in.

diff -r bef035c4468f -r 945ddfedaafd data_manager/add_ctat_resource_lib.xml
--- a/data_manager/add_ctat_resource_lib.xml	Fri Oct 19 17:11:42 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.xml	Fri Oct 19 17:17:05 2018 -0400
@@ -16,6 +16,16 @@
             #if str($genome_resource_library.build_type) == "specify_built_location":
               --build_location="${genome_resource_library.built_library_location}"
             #end if
+            #if str($mutation_lib_options.mutation_build) == "true":
+              --download_mutation_resources_url="${mutation_lib_options.source_url}" 
+              --cosmic_resources_location="${mutation_lib_options.cosmic_files_location}"
+              #if str($mutation_lib_options.force_download) == "true":
+                  --new_mutation_download
+              #end if
+              #if str($mutation_lib_options.redo_integration) == "true":
+                  --new_mutation_integration
+              #end if
+            #end if
         ]]>
     </command>
     <inputs>