Mercurial > repos > trinity_ctat > ctat_genome_ref_lib_data_manager_test2
changeset 2:65a69144e53d draft
Uploaded
| author | trinity_ctat |
|---|---|
| date | Tue, 12 Dec 2017 15:05:24 -0500 |
| parents | e071b1d24f24 |
| children | 1bde47139a8d |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 39 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Tue Dec 12 15:05:24 2017 -0500 @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/add_ctat_ref_lib.xml" id="ctat_genome_ref_lib_data_manager"> + <data_table name="ctat_genome_ref_libs"> + <output> + <column name="value" /> + <!-- value is used to uniquely identify this entry in the table. + For now id is also the name of the environment variable that is used within tools to + access a CTAT Resource Library. + FIX - Need to get rid of that and use command line params... + --> + <column name="name" /> + <!-- name is used as the selector in the pull down lists for items in this table. + --> + <column name="path" /> + <!-- path is the absolute path of the corresponding CTAT Genome Reference Library. + --> + <!-- <column name="path" output_ref="out_file"> --> + <!-- It is typical to move the data file, but because our tool gets the destination + location from the user, we do not want to move the data from that location. + The full path of the CTAT Resource library is returned in location. + So no need to change the value either. + --> + <!-- <move type="file" relativize_symlinks="False"> --> + <!--<source>${path}</source> --> + <!--<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ctat_genome_lib_build_dir</target> --> + <!--</move> --> + <!-- + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ctat_genome_lib_build_dir + </value_translation> + --> + <!-- The location returned by the tool should already be an absolute path. + <value_translation type="function">abspath</value_translation> + --> + <!--</column> --> + </output> + </data_table> + </data_manager> +</data_managers> \ No newline at end of file