Mercurial > repos > trinity_ctat > ctat_genome_ref_lib_data_manager_test2
changeset 1:e071b1d24f24 draft
Deleted selected files
| author | trinity_ctat |
|---|---|
| date | Tue, 12 Dec 2017 15:04:41 -0500 |
| parents | d220209e47f4 |
| children | 65a69144e53d |
| files | data_manager_conf.xml |
| diffstat | 1 files changed, 0 insertions(+), 39 deletions(-) [+] |
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--- a/data_manager_conf.xml Tue Dec 12 14:51:18 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,39 +0,0 @@ -<?xml version="1.0"?> -<data_managers> - <data_manager tool_file="data_manager/add_ctat_ref_lib.xml" id="ctat_genome_ref_lib_data_manager"> - <data_table name="ctat_genome_ref_libs"> - <output> - <column name="value" /> - <!-- value is used to uniquely identify this entry in the table. - For now id is also the name of the environment variable that is used within tools to - access a CTAT Resource Library. - FIX - Need to get rid of that and use command line params... - --> - <column name="name" /> - <!-- name is used as the selector in the pull down lists for items in this table. - --> - <column name="path"> - <!-- path is the absolute path of the corresponding CTAT Genome Reference Library. - --> - <!-- <column name="path" output_ref="out_file"> --> - <!-- It is typical to move the data file, but because our tool gets the destination - location from the user, we do not want to move the data from that location. - The full path of the CTAT Resource library is returned in location. - So no need to change the value either. - --> - <!-- <move type="file" relativize_symlinks="False"> --> - <!--<source>${path}</source> --> - <!--<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ctat_genome_lib_build_dir</target> --> - <!--</move> --> - <!-- - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ctat_genome_lib_build_dir - </value_translation> - --> - <!-- The location returned by the tool should already be an absolute path. - <value_translation type="function">abspath</value_translation> - --> - <!--</column> --> - </output> - </data_table> - </data_manager> -</data_managers> \ No newline at end of file