# HG changeset patch
# User trinity_ctat
# Date 1513109124 18000
# Node ID 65a69144e53d42b2bba714ae794a13bea4a5a679
# Parent  e071b1d24f24be8b3bee52e8f41f2e39bd44a4c6
Uploaded

diff -r e071b1d24f24 -r 65a69144e53d data_manager_conf.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Tue Dec 12 15:05:24 2017 -0500
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/add_ctat_ref_lib.xml" id="ctat_genome_ref_lib_data_manager"> 
+        <data_table name="ctat_genome_ref_libs">
+            <output>
+                <column name="value" />
+                    <!-- value is used to uniquely identify this entry in the table.
+                    For now id is also the name of the environment variable that is used within tools to
+                    access a CTAT Resource Library. 
+                    FIX - Need to get rid of that and use command line params...
+                    -->
+                <column name="name" />
+                    <!-- name is used as the selector in the pull down lists for items in this table.
+                    -->
+                <column name="path" />
+                    <!-- path is the absolute path of the corresponding CTAT Genome Reference Library.
+                    -->
+                <!-- <column name="path" output_ref="out_file"> -->
+                    <!-- It is typical to move the data file, but because our tool gets the destination
+                    location from the user, we do not want to move the data from that location.
+                    The full path of the CTAT Resource library is returned in location. 
+                    So no need to change the value either.
+                    -->
+                    <!-- <move type="file" relativize_symlinks="False"> -->
+                        <!--<source>${path}</source> -->
+                        <!--<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ctat_genome_lib_build_dir</target> -->
+                    <!--</move> -->
+                    <!--
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ctat_genome_lib_build_dir
+                    </value_translation>
+                    -->
+                    <!-- The location returned by the tool should already be an absolute path.
+                    <value_translation type="function">abspath</value_translation>
+                    -->
+                <!--</column> -->
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>
\ No newline at end of file