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annotate scde_list_intersect.xml @ 0:b1d730728d5f default tip

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author Ilya Sytchev <isytchev@hsph.harvard.edu>
date Mon, 07 Oct 2013 18:54:25 -0400
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1 <tool id="scde-intersect" name="SCDE Intersect" version="1.0" hidden="false">
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2
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3 <description>find common genes within multiple lists</description>
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4
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5 <version_string>scde --version</version_string>
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6
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7 <command interpreter="perl">
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8 scde intersect --output tab
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9 #for $i in $lists
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10 --file ${i.filename} --column ${i.column}
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11 #end for
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12 > $output
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13 </command>
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14
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15 <inputs>
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16 <repeat name="lists" title="List">
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17 <param name="filename" type="data" format="tabular" label="Dataset" help="Select a list for comparison from your History" />
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18 <param name="column" type="data_column" data_ref="filename" label="Gene Column" help="Select the column number corresponding to the gene identifier" />
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19 </repeat>
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20 </inputs>
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21
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22 <outputs>
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23 <data format="txt" name="output" />
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24 </outputs>
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25
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26 <help>
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27 **What it does**
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28
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29 This tool compares one or more lists and displays the common elements found in the selected column.
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30
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31 -----
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32
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33 .. class:: infomark
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34
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35 Upload data in tabular format to your history using the "Get Data" -> "Upload File" tool.
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36
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37 .. class:: infomark
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38
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39 Additional lists may be added using the "Add new List" button.
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40 </help>
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41 </tool>
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