Mercurial > repos > stemcellcommons > scdetools
comparison scde_list_intersect.xml @ 0:b1d730728d5f default tip
Initial commit.
author | Ilya Sytchev <isytchev@hsph.harvard.edu> |
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date | Mon, 07 Oct 2013 18:54:25 -0400 |
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1 <tool id="scde-intersect" name="SCDE Intersect" version="1.0" hidden="false"> | |
2 | |
3 <description>find common genes within multiple lists</description> | |
4 | |
5 <version_string>scde --version</version_string> | |
6 | |
7 <command interpreter="perl"> | |
8 scde intersect --output tab | |
9 #for $i in $lists | |
10 --file ${i.filename} --column ${i.column} | |
11 #end for | |
12 > $output | |
13 </command> | |
14 | |
15 <inputs> | |
16 <repeat name="lists" title="List"> | |
17 <param name="filename" type="data" format="tabular" label="Dataset" help="Select a list for comparison from your History" /> | |
18 <param name="column" type="data_column" data_ref="filename" label="Gene Column" help="Select the column number corresponding to the gene identifier" /> | |
19 </repeat> | |
20 </inputs> | |
21 | |
22 <outputs> | |
23 <data format="txt" name="output" /> | |
24 </outputs> | |
25 | |
26 <help> | |
27 **What it does** | |
28 | |
29 This tool compares one or more lists and displays the common elements found in the selected column. | |
30 | |
31 ----- | |
32 | |
33 .. class:: infomark | |
34 | |
35 Upload data in tabular format to your history using the "Get Data" -> "Upload File" tool. | |
36 | |
37 .. class:: infomark | |
38 | |
39 Additional lists may be added using the "Add new List" button. | |
40 </help> | |
41 </tool> | |
42 |