view scde_list_intersect.xml @ 0:b1d730728d5f default tip

Initial commit.

<tool id="scde-intersect" name="SCDE Intersect" version="1.0" hidden="false">

<description>find common genes within multiple lists</description>

<version_string>scde --version</version_string>

<command interpreter="perl">
    scde intersect --output tab
                   #for $i in $lists
                   --file ${i.filename} --column ${i.column}
                   #end for
                   > $output
</command>

<inputs>
  <repeat name="lists" title="List">
    <param name="filename" type="data" format="tabular" label="Dataset" help="Select a list for comparison from your History" />
    <param name="column" type="data_column" data_ref="filename" label="Gene Column" help="Select the column number corresponding to the gene identifier" />
  </repeat>
</inputs>

<outputs>
  <data  format="txt" name="output" />
</outputs> 

<help>
**What it does**

This tool compares one or more lists and displays the common elements found in the selected column.

-----

.. class:: infomark

Upload data in tabular format to your history using the "Get Data" -> "Upload File" tool.

.. class:: infomark

Additional lists may be added using the "Add new List" button.
</help>
</tool>