Mercurial > repos > stef > falco
changeset 4:f34be89e9674 draft
Uploaded
author | stef |
---|---|
date | Thu, 11 Sep 2014 06:40:27 -0400 |
parents | 4d3009640314 |
children | 90badfe82b95 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Sep 11 05:16:59 2014 -0400 +++ b/tool_dependencies.xml Thu Sep 11 06:40:27 2014 -0400 @@ -1,8 +1,9 @@ <?xml version="1.0"?> <tool_dependency> + <!-- PACKAGES --> <package name="R" version="3.0.3"> - <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> <readme>Let's see where this msg appears...R</readme> </package> @@ -10,18 +11,23 @@ <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> <readme>Let's see where this msg appears...samtools</readme> </package> + + <package name="bcftools" version="2"> + <repository changeset_revision="5f9ba601748e" name="bcftools" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <readme>Let's see where this msg appears...bcftools</readme> + </package> <package name="snpeff" version="3.4"> - <repository changeset_revision="7fb1061d905a" name="package_snpeff_3_4" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="7fb1061d905a" name="package_snpeff_3_4" owner="jjohnson" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> <readme>Let's see where this msg appears...snpeff</readme> </package> <package name="varscan" version="2"> - <repository changeset_revision="f82940004c84" name="varscan_version_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f82940004c84" name="varscan_version_2" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> <readme>Let's see where this msg appears...varscan</readme> </package> - <!-- TXT --> + <!-- ENV --> <set_environment version="1.0"> <environment_variable action="set_to" name="TOOL_DIR">$REPOSITORY_INSTALL_DIR</environment_variable> <readme>Let's see where this msg appears...ENV VAR</readme>